Report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza during 2025

Authors

  • Ms Vishma Ramji Varsani WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Dr Jessica E Miller WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Dr Tanya R Diefenbach-Elstob WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Mr James Barnes WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Ms Nikita Deshpande WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Ms Maha Khairbak WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Ms Olivia Lay WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Mr Cleve Rynehart WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Ms Sally Soppe WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Dr Clyde Dapat WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Dr Yi-Mo Deng WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Dr Saira Hussain WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Ms Heidi Peck WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Prof Ian G Barr WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia
  • Prof Patrick Reading WHO Collaborating Centre for Reference and Research on Influenza, 792 Elizabeth Street, Melbourne VIC 3001, Australia

DOI:

https://doi.org/10.33321/cdi.2026.50.054

Keywords:

influenza, vaccine, GISRS, surveillance, laboratory, annual report, WHO

Abstract

As part of its role in the World Health Organization (WHO) Global Influenza Surveillance and Response System (GISRS), the WHO Collaborating Centre for Reference and Research on Influenza in Melbourne (the Centre) received 13,817 human influenza-positive samples during 2025. Viruses were analysed for their antigenic, genetic, and antiviral susceptibility properties. Selected viruses were propagated in qualified cells or embryonated hens’ eggs for potential use in seasonal influenza virus vaccines. Of the 13,817 samples received or processed, influenza A(H1N1)pdm09 viruses predominated, accounting for 46.1% of samples, compared to 21.2% for A(H3N2) viruses and 19.5% for influenza B viruses; one influenza C virus was received. Among viruses analysed at the Centre, the majority of A(H1N1)pdm09 (> 99%) and influenza B (98%) viruses were antigenically similar to their respective WHO recommended vaccine strains for the Southern Hemisphere in 2025. In contrast, only 43% of A(H3N2) viruses were antigenically similar to their respective WHO recommended vaccine strains. Of 3,307 samples tested for susceptibility to the neuraminidase inhibitors oseltamivir and zanamivir, 37 A(H1N1)pdm09 viruses showed highly reduced inhibition by oseltamivir and no influenza viruses tested showed highly reduced inhibition by zanamivir. Of 5,080 samples with sequencing of the polymerase acidic (PA) gene, no genetic markers associated with highly reduced susceptibility to baloxavir marboxil were identified.

Downloads

Download data is not yet available.

References

Hay AJ, McCauley JW. The WHO global influenza surveillance and response system (GISRS)—a future perspective. Influenza Other Respir Viruses. 2018;12(5):551–7. doi: https://doi.org/10.1111/irv.12565.

Monto AS. Reflections on the global influenza surveillance and response system (GISRS) at 65 years: an expanding framework for influenza detection, prevention and control. Influenza Other Respir Viruses. 2018;12(1):10–2. doi: https://doi.org/10.1111/irv.12511.

Australian Centre for Disease Control (Australian CDC). National Notifiable Disease Surveillance System: National Communicable Disease Surveillance Dashboard. [Online resource.] Canberra: Australian CDC; 2025. [Accessed on 28 April 2025.] Available from: https://nindss.health.gov.au/pbi-dashboard/.

Sullivan SG, Carlson S, Cheng AC, Chilver MB, Dwyer DE, Irwin M et al. Where has all the influenza gone? The impact of COVID-19 on the circulation of influenza and other respiratory viruses, Australia, March to September 2020. Euro Surveill. 2020;25(47):2001847. doi: https://doi.org/10.2807/1560-7917.ES.2020.25.47.2001847.

Miller J, Diefenbach-Elstob T, Wordsworth R, Deshpande N, Soppe S, Dharmakumara J et al. Report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza during 2024. Commun Dis Intell (2018). 2026;50. doi: https://doi.org/10.33321/cdi.2026.50.014.

Koutsakos M, Wheatley AK, Laurie K, Kent SJ, Rockman S. Influenza lineage extinction during the COVID-19 pandemic? Nat Rev Microbiol. 2021;19(12):741-2. doi: https://doi.org/10.1038/s41579-021-00642-4.

Oh DY, Barr IG, Mosse JA, Laurie KL. MDCK-SIAT1 cells show improved isolation rates for recent human influenza viruses compared to conventional MDCK cells. J Clin Microbiol. 2008;46(7):2189–94. doi: https://doi.org/10.1128/JCM.00398-08.

Hobson D, Curry RL, Beare AS, Ward-Gardner A. The role of serum haemagglutination-inhibiting antibody in protection against challenge infection with influenza A2 and B viruses. J Hyg (Lond). 1972;70(4):767–77. doi: https://doi.org/10.1017/s0022172400022610.

Lin YP, Gregory V, Collins P, Kloess J, Wharton S, Cattle N et al. Neuraminidase receptor binding variants of human influenza A(H3N2) viruses resulting from substitution of aspartic acid 151 in the catalytic site: a role in virus attachment? J Virol. 2010;84(13):6769–81. doi: https://doi.org/10.1128/JVI.00458-10.

Shu B, Wu KH, Emery S, Villanueva J, Johnson R, Guthrie E et al. Design and performance of the CDC real-time reverse transcriptase PCR swine flu panel for detection of 2009 A (H1N1) pandemic influenza virus. J Clin Microbiol. 2011;49(7):2614–9. doi: https://doi.org/10.1128/JCM.02636-10.

Shu B, Kirby MK, Davis WG, Warnes C, Liddell J, Liu J et al. Multiplex real-time reverse transcription PCR for influenza A virus, influenza B virus, and severe acute respiratory syndrome coronavirus 2. Emerg Infect Dis. 2021;27(7):1821–30. doi: https://doi.org/10.3201/eid2707.210462.

Zhou B, Deng YM, Barnes JR, Sessions OM, Chou TW, Wilson M et al. Multiplex reverse transcription-PCR for simultaneous surveillance of influenza A and B viruses. J Clin Microbiol. 2017;55(12):3492–501. doi: https://doi.org/10.1128/JCM.00957-17.

Zhou B, Donnelly ME, Scholes DT, St George K, Hatta M, Kawaoka Y et al. Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human influenza A viruses. J Virol. 2009;83(19):10309–13. doi: https://doi.org/10.1128/JVI.01109-09.

Shepard SS, Meno S, Bahl J, Wilson MM, Barnes J, Neuhaus E. Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler. BMC Genomics. 2016;17(1):708. doi: https://doi.org/10.1186/s12864-016-3030-6.

Hadfield J, Megill C, Bell SM, Huddleston J, Potter B, Callender C et al. Nextstrain: real-time tracking of pathogen evolution. Bioinformatics. 2018;34(23):4121–3. doi: https://doi.org/10.1093/bioinformatics/bty407.

Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A et al. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 2020;37(5):1530–4. doi: https://doi.org/10.1093/molbev/msaa015.

Yu G. Using ggtree to visualize data on tree-like structures. Curr Protoc Bioinformatics. 2020;69(1):e96. doi: https://doi.org/10.1002/cpbi.96.

Aksamentov I, Cornelius R, Hodcroft EB, Neher RA. Nextclade: clade assignment, mutation calling and quality control for viral genomes. J Open Source Softw. 2021;6(67):3773. doi: https://doi.org/10.21105/joss.03773.

Hurt AC, Besselaar TG, Daniels RS, Ermetal B, Fry A, Gubareva L et al. Global update on the susceptibility of human influenza viruses to neuraminidase inhibitors, 2014–2015. Antiviral Res. 2016;132:178–85. doi: https://doi.org/10.1016/j.antiviral.2016.06.001.

World Health Organization (WHO) Global Influenza Programme. Laboratory methodologies for testing the antiviral susceptibility of influenza viruses: Neuraminidase inhibitor (NAI). [Webpage.] Geneva: WHO; 2023. [Accessed on 29 March 2023.] Available from: https://www.who.int/teams/global-influenza-programme/laboratory-network/quality-assurance/antiviral-susceptibility-influenza/neuraminidase-inhibitor.

Hussain S, Meijer A, Govorkova EA, Dapat C, Gubareva LV, Barr IG et al. Global update on the susceptibilities of influenza viruses to neuraminidase inhibitors and the cap-dependent endonuclease inhibitor baloxavir, 2020–2023. Antiviral Res. 2025;241:106217. doi: https://doi.org/10.1016/j.antiviral.2025.106217.

Gerdil C. The annual production cycle for influenza vaccine. Vaccine. 2003;21(16):1776–9. doi: https://doi.org/10.1016/s0264-410x(03)00071-9.

Stöhr K, Bucher D, Colgate T, Wood J. Influenza virus surveillance, vaccine strain selection, and manufacture. Methods Mol Biol. 2012;865:147–62. doi: https://doi.org/10.1007/978-1-61779-621-0_9.

Weir JP, Gruber MF. An overview of the regulation of influenza vaccines in the United States. Influenza Other Respir Viruses. 2016;10(5):354–60. doi: https://doi.org/10.1111/irv.12383.

WHO Global Influenza Surveillance Network. Manual for the laboratory diagnosis and virological surveillance of influenza. Geneva: WHO; I January 2011. Available from: https://www.who.int/publications/i/item/manual-for-the-laboratory-diagnosis-and-virological-surveillance-of-influenza.

Roth B, Mohr H, Enders M, Garten W, Gregersen JP. Isolation of influenza viruses in MDCK 33016PF cells and clearance of contaminating respiratory viruses. Vaccine. 2012;30(3):517–22. doi: https://doi.org/10.1016/j.vaccine.2011.11.063.

Jelley L, Levy A, Deng YM, Spirason N, Lang J, Buettner I et al. Influenza C infections in Western Australia and Victoria from 2008 to 2014. Influenza Other Respir Viruses. 2016;10(6):455–61. doi: https://doi.org/10.1111/irv.12402.

Curran M, Hampson A. National influenza surveillance 1997. Commun Dis Intell. 1998;22(5):69–74. doi: https://doi.org/10.33321/cdi.1998.22.14.

Halliday L, Roberts L, Hampson A. Annual report of the National Influenza Surveillance Scheme, 1998. Commun Dis Intell. 1999;23(7):185–92. doi: https://doi.org/10.33321/cdi.1999.23.25.

Thomson J, Lin M, Hampson A. Annual report of the National Influenza Surveillance Scheme, 1999. Commun Dis Intell. 2000;24(6):145–52. doi: https://doi.org/10.33321/cdi.2000.24.22.

Firestone SM, Barr IG, Roche PW, Walker JC. Annual report of the National Influenza Surveillance Scheme, 2005. Commun Dis Intell Q Rep. 2006;30(2):189–200. doi: https://doi.org/10.33321/cdi.2006.30.14.

Li J, Hampson A, Roche PW, Yohannes K, Spencer JD. Annual report of the National Influenza Surveillance Scheme, 2004. Commun Dis Intell Q Rep. 2005;29(2):125–36. doi: https://doi.org/10.33321/cdi.2005.29.11.

Roche P, Spencer J, Hampson A. Annual report of the National Influenza Surveillance Scheme, 2001. Commun Dis Intell Q Rep. 2002;26(2):204–13. doi: https://doi.org/10.33321/cdi.2002.26.15.

Roche P, Spencer J, Merianos A, Hampson A. Annual report of the National Influenza Surveillance Scheme, 2000. Commun Dis Intell Q Rep. 2001;25(3):107–12. doi: https://doi.org/10.33321/cdi.2001.25.22.

Yohannes K, Roche P, Hampson A, Miller M, Spencer J. Annual report of the National Influenza Surveillance Scheme, 2003. Commun Dis Intell Q Rep. 2004;28(2):160–8. doi: https://doi.org/10.33321/cdi.2004.28.12.

Yohannes K, Roche P, Spencer J, Hampson A. Annual report of the National Influenza Surveillance Scheme, 2002. Commun Dis Intell Q Rep. 2003;27(2):162–72. doi: https://doi.org/10.33321/cdi.2003.27.40.

O'Brien K, Barr IG. Annual report of the National Influenza Surveillance Scheme, 2006. Commun Dis Intell Q Rep. 2007;31(2):167–79. doi: https://doi.org/10.33321/cdi.2007.31.12.

Owen R, Barr IG, Pengilley A, Liu C, Paterson B, Kaczmarek M et al. Annual report of the National Influenza Surveillance Scheme, 2007. Commun Dis Intell Q Rep. 2008;32(2):208–26. doi: https://doi.org/10.33321/cdi.2008.32.19.

Kaczmarek M, Owen R, Barr IG. Annual report of the National Influenza Surveillance Scheme, 2008. Commun Dis Intell Q Rep. 2010;34(1):8–22. doi: https://doi.org/10.33321/cdi.2010.34.2.

Pennington K, Owen R, Mun J. Annual report of the National Influenza Surveillance Scheme, 2009. Commun Dis Intell Q Rep. 2017;41(4):E383–454. doi: https://doi.org/10.33321/cdi.2017.41.47.

Gavin K, Owen R, Barr IG. Annual report of the National Influenza Surveillance Scheme, 2010. Commun Dis Intell Q Rep. 2017;41(4):E348–68. doi: https://doi.org/10.33321/cdi.2017.41.45.

Sullivan SG, Chow MK, Barr IG, Kelso A. Influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza annual report, 2014. Commun Dis Intell Q Rep. 2015;39(4):E602–11. doi: https://doi.org/10.33321/cdi.2015.39.57.

Leung VK, Deng YM, Kaye M, Buettner I, Lau H, Leang SK et al. Annual report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza in 2016. Commun Dis Intell (2018). 2019;43. doi: http://doi.org/10.33321/cdi.2019.43.3.

Leung VK, Spirason N, Lau H, Buettner I, Leang SK, Chow MK. Influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza annual report, 2015. Commun Dis Intell Q Rep. 2017;41(2):E150–60. doi: https://doi.org/10.33321/cdi.2017.41.20.

Peck H, Moselen J, Brown SK, Triantafilou M, Lau H, Grau M et al. Report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza in 2019. Commun Dis Intell (2018). 2021;45. doi: https://doi.org/10.33321/cdi.2021.45.43.

Roe M, Kaye M, Iannello P, Lau H, Buettner I, Tolosa MX et al. Report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza in 2017. Commun Dis Intell (2018). 2019;43. doi: https://doi.org/10.33321/cdi.2019.43.25.

Price OH, Spirason N, Rynehart C, Brown SK, Todd A, Peck H et al. Report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza in 2018. Commun Dis Intell (2018). 2020;44. doi: https://doi.org/10.33321/cdi.2020.44.16.

O’Neill G, Aziz A, Kuba M, Brown SK, Lau H, Soppe S et al. Report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza during 2020–2021. Commun Dis Intell (2018). 2022;46. doi: https://doi.org/10.33321/cdi.2022.46.63.

Communicable Disease Epidemiology and Surveillance Section. Report of the National Influenza Surveillance Scheme, 2011 to 2018. Commun Dis Intell (2018). 2022;46. doi: https://doi.org/10.33321/cdi.2022.46.12.

Diefenbach-Elstob TR, Chanthalavanh P, Bobbitt ME, Brown SK, Rynehart C, Spirason N et al. Report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza during 2022. Commun Dis Intell (2018). 2023;47. doi: https://doi.org/10.33321/cdi.2023.47.43.

Diefenbach-Elstob TR, Lay O, Zakis T, Deshpande N, Soppe S, Peck H et al. Report on influenza viruses received and tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza during 2023. Commun Dis Intell (2018). 2025;49. doi: https://doi.org/10.33321/cdi.2025.49.028.

WHO Global Influenza Programme. Influenza Update N° 384: 04 January 2021, based on data up to 20 December 2020. Geneva: WHO; 4 January 2021. Available from: https://cdn.who.int/media/docs/default-source/influenza/influenza-updates/2020/2021_01_04_surveillance_update_384.pdf.

Whitehead S, Welsh L, Donovan A, Bilgin G, Nguyen N, Trenorden C et al. 2024 Annual Australian Respiratory Surveillance Report. Commun Dis Intell (2018). 2026;50. doi: https://doi.org/10.33321/cdi.2026.50.013.

Australian CDC. Australian Respiratory Surveillance Report – 1 to 28 December 2025. Canberra: Australian CDC; 9 January 2026. Available from: https://www.cdc.gov.au/resources/publications/australian-respiratory-surveillance-report-1-28-december-2025.

WHO. Disease outbreak news. Seasonal influenza – global situation. [Media release.] Geneva: WHO; 10 December 2025. Available from: https://www.who.int/emergencies/disease-outbreak-news/item/2025-DON586.

Dapat C, Peck H, Jelley L, Diefenbach-Elstob T, Slater T, Hussain S et al. Extended influenza seasons in Australia and New Zealand in 2025 due to the emergence of influenza A(H3N2) subclade K viruses. Euro Surveill. 2025;30(49):2500894. doi: https://doi.org/10.2807/1560-7917.ES.2025.30.49.2500894.

WHO Global Influenza Surveillance and Response System (WHO GISRS). FluNet Chart: Global influenza virological surveillance data visualization. [Online resource.] Geneva: WHO; 2026. Available from: https://worldhealthorg.shinyapps.io/flunetchart/.

Australian Bureau of Statistics. National, state and territory population. Reference period: September 2025. [Webpage.] Canberra: Australian Bureau of Statistics: 19 March 2026. Available from: https://www.abs.gov.au/statistics/people/population/national-state-and-territory-population/sep-2025.

Australian Bureau of Statistics. Deaths due to acute respiratory infections in Australia. Reference period: April 2026. [Webpage.] Canberra: Australian Bureau of Statistics; 29 May 2026. Available from: https://www.abs.gov.au/statistics/health/causes-death/deaths-due-acute-respiratory-infections-australia/apr-2026.

Dhanasekaran V, Sullivan S, Edwards KM, Xie R, Khvorov A, Valkenburg SA et al. Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination. Nat Commun. 2022;13(1):1721. doi: https://doi.org/10.1038/s41467-022-29402-5.

Paget J, Caini S, Del Riccio M, van Waarden W, Meijer A. Has influenza B/Yamagata become extinct and what implications might this have for quadrivalent influenza vaccines? Euro Surveill. 2022;27(39):2200753. doi: https://doi.org/10.2807/1560-7917.ES.2022.27.39.2200753.

WHO. Recommendations announced for influenza vaccine composition for the 2026 southern hemisphere influenza season. [Media release.] Geneva: WHO; 26 September 2025. Available from: https://www.who.int/news/item/26-09-2025-recommendations-announced-for-influenza-vaccine-composition-for-the-2026-southern-hemisphere-influenza-season.

Dark and light blue shapes displaying the logo of Communicable Diseases Intelligence. The cover photo features a laboratory technician writing on a test tube, with other blue and red test tubes visable in the corner. The bottom of the cover features a lockup of the logo of the Australian Centre for Disease Control alongside the Commonwealth Coat of Arms.

Downloads

Published

25/08/26

How to Cite

Ramji Varsani, Vishma, Jessica Miller, Tanya Diefenbach-Elstob, James Barnes, Nikita Deshpande, Maha Khairbak, Olivia Lay, et al. 2026. “Report on Influenza Viruses Received and Tested by the Melbourne WHO Collaborating Centre for Reference and Research on Influenza During 2025”. Communicable Diseases Intelligence 50 (August). https://doi.org/10.33321/cdi.2026.50.054.

Issue

Section

Recently published

Categories