COVID-19, Australia: Epidemiology Report 18: Fortnightly reporting period ending 7 June 2020
Notified cases of COVID-19 and associated deaths reported to the National Notifiable Diseases Surveillance System (NNDSS) to 7 June 2020
DOI:
https://doi.org/10.33321/cdi.2020.52Keywords:
SARS-CoV-2, novel coronavirus, 2019-nCoV, coronavirus disease 2019, COVID-19, acute respiratory disease, epidemiology, AustraliaAbstract
Confirmed cases in Australia notified up to 7 June 2020
Notifications 7,277
Deaths 102
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References
Australian Government Department of Health. Series of National Guidelines (SoNGs): Coronavirus Disease 2019 (COVID-19). CDNA National guidelines for public health units. [Internet.] Canberra: Australian Government Department of Health; 29 May 2020. [Accessed on 2 June 2020.] Available from: https://www1.health.gov.au/internet/main/publishing.nsf/Content/cdna-song-novel-coronavirus.htm.
Government of the United Kingdom. Guidance: Coronavirus (COVID-19): getting tested. [Internet.] London: Government of the United Kingdom; 15 April 2020. [Accessed on 1 June 2020.] Available from: https://www.gov.uk/guidance/coronavirus-covid-19-getting-tested.
New Zealand Government. COVID-19 testing: Information about COVID-19 testing in New Zealand. [Internet.] Wellington: New Zealand Government; 18 April 2020. [Accessed on 1 June 2020.] Available from: https://covid19.govt.nz/covid-19/about-covid-19/covid-19-testing/.
COVID-19 National Incident Room Surveillance Team. COVID-19, Australia: Epidemiology Report 16: Reporting week ending 23:59 AEST 17 May 2020. Commun Dis Intell (2018). 2020;44. doi: https://doi.org/10.33321/cdi.2020.44.45.
Public Health Agency of Canada (PHAC). Coronavirus disease 2019 (COVID-19). Epidemiology update. Updated: 11 June 2020, 7 pm EDT. [Internet.] Ottawa: Government of Canada, PHAC; 2020. [Accessed on 12 June 2020.] Available from: https://health-infobase.canada.ca/covid-19/epidemiological-summary-covid-19-cases.html.
European Centre for Disease Prevention and Control (ECDC) COVID-19 surveillance report: Week 23, 2020. [Internet.] Solna: ECDC; 11 June 2020. [Accessed on 12 June 2020.] Available from: https://covid19-surveillance-report.ecdc.europa.eu/.
Statistics Canada. Table 13-10-0775-01. Detailed preliminary information on cases of COVID-19: 4 Dimensions (Aggregated data), Public Health Agency of Canada. [Internet.] Ottawa: Statistics Canada; 2020. [Accessed on 3 June 2020.] Available from: https://www150.statcan.gc.ca/t1/tbl1/en/tv.action?pid=1310077501.
ECDC. COVID-19 surveillance report: Week 21, 2020. [Internet.] Solna: ECDC; 2 June 2020. [Accessed on 3 June 2020.] Available from: https://covid19-surveillance-report.ecdc.europa.eu/.
Zheng Z, Peng F, Xu B, Zhao J, Liu H, Peng J et al. Risk factors of critical & mortal COVID-19 cases: a systematic literature review and meta-analysis. J Infect. 2020. doi: https://doi.org/10.1016/j.jinf.2020.04.021.
Onder G, Rezza G, Brusaferro S. Case-fatality rate and characteristics of patients dying in relation to COVID-19 in Italy. JAMA. 2020;323(18):1775-1776. doi: https://doi.org/10.1001/jama.2020.4683.
Centers for Disease Control and Prevention (CDC). COVID-Net: a weekly summary of U.S. COVID-19 hospitalization data. COVID-19 laboratory-confirmed hospitalizations: preliminary data as of May 23, 2020. [Internet.] Atlanta: United States Government Department of Health and Human Services, CDC; 2020. [Accessed on 3 June 2020.] Available from: https://gis.cdc.gov/grasp/COVIDNet/COVID19_5.html.
ECDC. COVID-19 surveillance report: Week 2020-19. 6: Other epidemiological characteristics. [Internet.] Solna: ECDC; 14 May 2020. [Accessed on 19 May 2020.] Available from: https://covid19-surveillance-report.ecdc.europa.eu/#6_other_epidemiological_characteristics.
Government of Canada. Epidemiological summary of COVID-19 cases in Canada: last data update May 19, 2020, 11:00 ET. [Internet.] Ottawa: Government of Canada; 2020. [Accessed on 19 May 2020.] Available from: https://health-infobase.canada.ca/covid-19/epidemiological-summary-covid-19-cases.html.
Australian Government Department of Health. Coronavirus (COVID-19) advice for the health and aged care sector. [Internet.] Canberra: Australian Government Department of Health; 2020. [Accessed 3 June 2020.] Available from: https://www.health.gov.au/news/health-alerts/novel-coronavirus-2019-ncov-health-alert/coronavirus-covid-19-advice-for-the-health-and-aged-care-sector.
Communicable Diseases Network Australia (CDNA). Coronavirus disease 2019 (COVID-19) outbreaks in residential care facilities: CDNA national guidelines for the prevention, control and public health management of COVID-19 outbreaks in residential care facilities in Australia. Canberra: Australian Government Department of Health, CDNA; 13 March 2020. [Accessed on 3 June 2020.] Available from: https://www.health.gov.au/sites/default/files/documents/2020/03/coronavirus-covid-19-guidelines-for-outbreaks-in-residential-care-facilities.pdf.
Government of New South Wales. Answers to your questions about the rules: FAQs about changes to the rules, effective from Monday 1 June. [Internet.] Sydney: Government of New South Wales; 2020. [Accessed on 11 June 2020.] Available from: https://www.nsw.gov.au/covid-19/what-you-can-and-cant-do-under-rules/changes#what-has-changed-from-monday-1-june.
Department of Health and Human Services (DHHS). Victoria’s restriction levels. [Internet.] Melbourne: Victoria State Government, DHHS; 2020. [Accessed on 11 June 2020.] Available from: https://www.dhhs.vic.gov.au/victorias-restriction-levels-covid-19.
Queensland Government. Roadmap to easing restrictions. [Internet.] Brisbane: Queensland Government; 2020. [Accessed on 11 June 2020.] Available from: https://www.covid19.qld.gov.au/government-actions/roadmap-to-easing-queenslands-restrictions.
Government of Western Australia. Phase 3 - Easing of restrictions - frequently asked questions. [Internet.] Perth: Government of Western Australia; 2020. [Accessed on 11 June 2020.] Available from: https://www.wa.gov.au/government/publications/phase-3-easing-of-restrictions-frequently-asked-questions.
Government of South Australia. South Australian roadmap for easing COVID-19 restrictions. Adelaide: Government of South Australia; 2020. [Accessed on 20 May 2020.] Available from: https://www.covid-19.sa.gov.au/__data/assets/pdf_file/0012/195879/200059.4-COVID-19-RoadMap_FINAL.PDF.
Government of South Australia. Recovery from COVID-19. [Internet.] Adelaide: Government of South Australia; 2020. [Accessed on 11 June 2020.] Available from: https://www.covid-19.sa.gov.au/recovery.
Tasmanian Government. Roadmap to recovery. [Internet.] Hobart: Tasmanian Government; 2020. [Accessed on 11 June 2020.] Available from: https://coronavirus.tas.gov.au/families-community/roadmap-to-recovery.
Australian Capital Territory Government. FAQs changes to restrictions. [Internet.] Canberra: Australian Capital Territory Government; 2020. [Accessed on 11 June 2020.] Available from: https://www.covid19.act.gov.au/faqs/faqs-changes-to-restrictions.
Australian Capital Territory Government (ACT Government). Canberra's recovery plan: COVID-19 easing of restrictions roadmap. Canberra: ACT Government; 26 May 2020. [Accessed on 29 May 2020.] Available from: https://www.covid19.act.gov.au/__data/assets/pdf_file/0007/1551778/CV_Roadmap_Recovery-plan_ease-of-restrictions_0.4.1.pdf.
Northern Territory Government. Roadmap to the new normal. Stage 3 – Friday 5 June (current). [Internet.] Darwin: Northern Territory Government; 2020. [Accessed on 11 June 2020.] Available from: https://coronavirus.nt.gov.au/roadmap-new-normal#/stage_3_friday_5_june_current.
World Health Organization (WHO). Coronavirus disease 2019 (COVID-19) situation report – 139. [Internet.] Geneva: WHO; 2020. [Accessed on 12 June 2020.] Available from: https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200607-covid-19-sitrep-139.pdf.
Gall C. Istanbul death toll hints Turkey is hiding a wider coronavirus calamity. [Internet.] New York: The New York Times; 20 April 2020. [Accessed on 1 June 2020.] Available from: https://www.nytimes.com/2020/04/20/world/middleeast/coronavirus-turkey-deaths.html.
Wu J, McCann A, Katz J, Peltier E. 87,000 missing deaths: tracking the true toll of the coronavirus outbreak. [Internet.] New York: The New York Times; 21 April 2020. [Accessed on 1 June 2020.] Available from: https://www.nytimes.com/interactive/2020/04/21/world/coronavirus-missing-deaths.html.
WHO. COVID-19 sitation in the WHO European Region. [Internet.] Geneva: WHO; 2020. [Accessed on 1 June 2020.] Available from: https://who.maps.arcgis.com/apps/opsdashboard/index.html#/ead3c6475654481ca51c248d52ab9c61.
United Nations Office for the Coordination of Humanitarian Affairs (OCHA). Islamic Republic of Iran: flash update - as of 28 May 2020. [Internet.] New York: United Nations, OCHA; 28 May 2020. [Accessed on 1 June 2020.] Available from: https://reliefweb.int/report/iran-islamic-republic/islamic-republic-iran-flash-update-28-may-2020.
African Centres for Disease Control and Prevention (Africa CDC). Home / Outbreak Briefs. Outbreak Brief 20: COVID-19 Pandemic – 2 June 2020. [Internet.] Addis Ababa: African Union, Africa CDC; 2020. [Accessed on 10 June 2020.] Available from: https://africacdc.org/download/outbreak-brief-19-covid-19-pandemic-26-may-2020-2/.
Yadav P, Mehndiratta A, Chalkidou K, Rupani S, Reddy K. India’s COVID-19 testing capacity must grow by a factor of 10: here’s how that can happen. [Internet.] Washington, DC: Center for Global Development; 4 June 2020. [Accessed on 10 June 2020.] Available from: https://www.cgdev.org/publication/indias-covid-19-testing-capacity-must-grow-factor-10-heres-how-can-happen.
Indian Council of Medical Research (ICMR). SARS-CoV-2 (COVID-19) testing: status update. 01 June 2020, 09:00 AM IST. New Delhi: Government of India, Ministry of Health and Family Welfare, Department of Health Research, ICMR; 1 June 2020. [Accessed on 10 June 2020.] Available from: https://www.icmr.gov.in/pdf/covid/update/ICMR_testing_update_01June2020_9AM_IST.pdf.
ICMR. SARS-CoV-2 (COVID-19) testing: status update. 07 June 2020, 09:00 AM IST. New Delhi: Government of India, Ministry of Health and Family Welfare, Department of Health Research, ICMR; 7 June 2020. [Accessed on 10 June 2020.] Available from: https://www.icmr.gov.in/pdf/covid/update/ICMR_testing_update_07June2020_9AM_IST.pdf.
WHO. WHO Coronavirus Disease (COVID-19) dashboard. [Internet.] Geneva: WHO; 2020. [Accessed on 10 June 2020.] Available from: https://covid19.who.int/.
Philippines Department of Health. COVID-19 case tracker. [Internet.] Manila: Republic of the Philippines, Department of Health; 2020. [Accessed on 10 June 2020.] Available from: https://www.doh.gov.ph/covid-19/case-tracker.
WHO. Report of the WHO-China joint mission on coronavirus disease 2019 (COVID-19). [Internet.] Geneva: WHO; 2020. [Accessed 1 Mar 2020.] Available from: https://www.who.int/docs/default-source/coronaviruse/who-china-joint-mission-on-covid-19-final-report.pdf.
Wölfel R, Corman VM, Guggemos W, Seilmaier M, Zange S, Müller MA et al. Virological assessment of hospitalized patients with COVID-2019. Nature. 2020. doi: https://doi.org/10.1038/s41586-020-2196-x.
Cheng HY, Jian SW, Liu DP, Ng TC, Huang WT, Lin HH. Contact tracing assessment of COVID-19 transmission dynamics in Taiwan and risk at different exposure periods before and after symptom onset. JAMA Intern Med. 2020. doi: https://doi.org/10.1001/jamainternmed.2020.2020.
Korea Centers for Disease Control and Prevention (KCDC). Division of risk assessment and international cooperation. Findings from investigation and analysis of re-positive cases. [Internet.] Cheongju: Government of South Korea, KCDC; 2020. [Accessed on 24 May 2020.] Available from: https://www.cdc.go.kr/board/board.es?mid=a30402000000&bid=0030&act=view&list_no=367267&nPage=1.
Zhu Y, Bloxham CJ, Hulme KD, Sinclair JE, Tong ZW, Steele LE et al. Children are unlikely to have been the primary source of household SARS-CoV-2 infections. medRxiv. 2020. doi: https://doi.org/10.1101/2020.03.26.20044826.
Gudbjartsson DF, Helgason A, Jonsson H, Magnusson OT, Melsted P, Norddahl GL et al. Spread of SARS-CoV-2 in the Icelandic population. N Engl J Med. 2020. doi: https://doi.org/10.1056/NEJMoa2006100.
European Centre for Disease Prevention and Control (ECDC). Rapid risk assessment: Paediatric inflammatory multisystem syndrome and SARS-CoV-2 infection in children – 15 May 2020. Solna: ECDC; 2020. [Accessed on 19 May 2020.] Available from: https://www.ecdc.europa.eu/sites/default/files/documents/covid-19-risk-assessment-paediatric-inflammatory-multisystem-syndrome-15-May-2020.pdf.
WHO. Coronavirus disease 2019 (COVID-19) situation report – 29. [Internet.] Geneva: WHO; 2020. [Accessed 22 Feb 2020.] Available from: https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200218-sitrep-29-covid-19.pdf.
Pung R, Chiew CJ, Young BE, Chin S, Chen M, Clapham HE. Investigation of three clusters of COVID-19 in Singapore: implications for surveillance and response measures. Lancet. 2020;395(10229):1039–46.
Rockett RJ, Arnott A, Lam C, Sadsad R, Timms V, Gray KA et al. Revealing COVID-19 transmission by SARS-CoV-2 genome sequencing and agent based modelling. bioRxiv. doi: https://doi.org/10.1101/2020.04.19.048751.
Nextstrain team. Genomic epidemiology of novel coronavirus – Oceania-focused subsampling. [Internet.] [Accessed on 5 May 2020.] Available online: https://nextstrain.org/ncov/oceania?c=division&f_country=Australia&l=radial.
Seemann T, Lane C, Sherry N, Duchene S, Goncalves da Silva A, Caly L et al. Tracking the COVID-19 pandemic in Australia using genomics. medRxiv. 2020 doi: https://doi.org/10.1101/2020.05.12.20099929.
Sun P, Qiu S, Liu Z, Ren J, Xi JJ. Clinical characteristics of 50466 patients with 2019-nCoV infection. medRxiv. 2020. doi: https://doi.org/10.1101/2020.02.18.20024539.
Li B, Bai W, Hashikawa T. The neuroinvasive potential of SARS-CoV-2 may be at least partially responsible for the respiratory failure of COVID-19 patients. J Med Virol. 2020. doi: https://doi.org/10.1002/jmv.25728.
Mao L, Jin H, Wang M, Hu Y, Chen S, He Q et al. Neurological manifestations of hospitalized patients with coronavirus disease 2019 in Wuhan, China. JAMA Neurol. 2020;e201127. doi: https://doi.org/10.1001/jamaneurol.2020.1127.
Drew DA, Nguyen LH, Steves CJ, Wolf J, Spector TC, Chan AT. Rapid implementation of mobile technology for real-time epidemiology of COVID-19. medRxiv. 2020. doi: https://doi.org/10.1101/2020.04.02.20051334.
Venkatakrishnan AJ, Puranik A, Anand A, Zemmour D, Yao X, Wu X et al. Knowledge synthesis from 100 million biomedical documents augments the deep expression profiling of coronavirus receptors. bioRxiv. 2020. doi: https://doi.org/10.1101/2020.03.24.005702.
Brann DH, Tsukahara T, Weinreb C, Logan DW, Datta SR. Non-neural expression of SARS-CoV-2 entry genes in the olfactory epithelium suggests mechanisms underlying anosmia in COVID-19 patients. bioRxiv. 2020. doi: https://doi.org/10.1101/2020.03.25.009084.
Inciardi RM, Lupi L, Zaccone G, Italia L, Raffo M, Tomasoni D et al. Cardiac involvement in a patient with coronavirus disease 2019 (COVID-19). JAMA Cardiol. 2020. doi: https://doi.org/10.1001/jamacardio.2020.1096.
Guo T, Fan Y, Chen M, Wu X, Zhang L, He T et al. Cardiovascular implications of fatal outcomes of patients with coronavirus disease 2019 (COVID-19). JAMA Cardiol. 2020. doi: https://doi.org/10.1001/jamacardio.2020.1017.
Madjid M, Safavi-Naeini P, Solomon SD, Vardeny O. Potential effects of coronaviruses on the cardiovascular system: a review. JAMA Cardiol. 2020. doi: https://doi.org/10.1001/jamacardio.2020.1286.
Riphagen S, Gomez X, Gonzalez-Martinez C, Wilkinson N, Theocharis P. Hyperinflammatory shock in children during COVID-19 pandemic. Lancet. 2020. doi: https://doi.org/10.1016/S0140-6736(20)31094-1.
Morand A, Urbina D, Fabre A. COVID-19 and Kawasaki like disease: the known-known, the unknown-known and the unknown-unknown. Preprints. 2020;2020050160. doi: https://doi.org/10.20944/preprints202005.0160.v1.
WHO. Clinical management of severe acute respiratory infection when novel coronavirus (nCoV) infection is suspected. [Internet.] Geneva: WHO; 2020. [Accessed 23 Feb 2020.] Available from: https://www.who.int/publications-detail/clinical-management-of-severe-acute-respiratory-infection-when-novel-coronavirus-(ncov)-infection-is-suspected.
Harrison C. Coronavirus puts drug re-purposing on the fast track. Nat Biotechnol. 2020. doi: https://doi.org/10.1038/d41587-020-00003-1.
Wang M, Cao R, Zhang L, Yang X, Liu J, Xu M et al. Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in vitro. Cell Research. 2020;30;269–71.
Tang W, Cao Z, Han M, Wang Z, Chen W, Sun W et al. Hydroxychloroquine in patients with mainly mild to moderate coronavirus disease 2019: open label, randomised controlled trial. BMJ. 2020. doi: https://doi.org/10.1136/bmj.m1849.
Cao B, Wang Y, Wen D, Liu W, Wang J, Fan G et al. A trial of lopinavir–ritonavir in adults hospitalized with severe Covid-19. N Engl J Med. 2020;382:1787–99.
National Institute of Allergy and Infectious Diseases (NIAID). NIH Clinical Trial Shows Remdesivir Accelerates Recovery from Advanced COVID-19. [Internet.] Bethesda: Government of the United States of America, National Institutes of Heath, NIAID; 2020. [Accessed on 19 May 2020.] Available from: https://www.niaid.nih.gov/news-events/nih-clinical-trial-shows-remdesivir-accelerates-recovery-advanced-covid-19.
Wang Y, Zhang D, Du G, Du R, Zhao J, Jin Y et al. Remdesivir in adults with severe COVID-19: a randomised, double-blind, placebo-controlled, multicentre trial. Lancet. 2020;395(10236);1569–78
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